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30 Days, 30 Minutes: A Curated Collection of Medical Imaging Notebooks

Curated collection of 54 medical imaging notebooks compiled over 30 days, covering topics from DICOM annotation to radiomic feature extraction, designed to enhance learning and research.

Welcome to an exciting compilation that I’ve been working on for the past month! In an effort to make high-quality information on medical imaging more accessible, I’ve spent 30 minutes every day for the last 30 days curating a collection of notebooks. These notebooks explore various topics within the realm of medical imaging, from DICOM annotation to CNNs for bone age classification.

What’s Inside the 54-Notebook Collection?

1. DICOM Annotation Import

Learn about the annotations that can and cannot be uploaded through NDJSON.

2. DICOM to Text

Discover how to recognize text and extract metadata from DICOM format documents.

3. Nifti Read Example

An illustrative notebook that focuses on reading Nifti files and iterating over patches of the volumes.

4. Example Openneuro

Find out how to use cottoncandy to access data from OpenNeuro via AWS S3.

5. Example Radiomic Feature Extraction by PyRadiomics

An introductory guide to setting up the extractor and extracting radiomic features.

…and 49 more!

Why Subscribe?

These notebooks are invaluable resources for anyone looking to dig deep into medical imaging, whether you’re a beginner or an advanced researcher. Each notebook provides detailed explanations and code, enabling you to understand the subject matter thoroughly.

How to Get Access?

To get full access to this rich repository of medical imaging notebooks, all you need to do is subscribe to our newsletter.

Wrapping It Up

I hope this collection serves as a treasure trove of knowledge and skills in medical imaging for you. To get access, make sure you subscribe to our newsletter and stay tuned for more exciting updates!

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